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NCBI (PubMed, Gene, ClinVar, dbSNP) integration

Search PubMed, Gene, ClinVar, dbSNP and other NCBI databases through the official E-utilities, get record summaries and full records, and get alerts for new PubMed articles. Read-only and free.

Data and analyticsProductivity1 triggers · 6 actions
Connect NCBI (PubMed, Gene, ClinVar, dbSNP) freeSee what you can automate

Build it by describing it

Type a sentence like this and the copilot builds, validates and simulates the workflow.
When “New PubMed Article” happens in NCBI (PubMed, Gene, ClinVar, dbSNP), check the details with AI, then “Search PubMed Articles” and tell my team in Slack.
  • Simulated before it goes live
  • Fixes proposed when something breaks
  • One credit per run

Triggers

Start a workflow when this happens
  • WHEN
    New PubMed Article

    Triggers when a new article matching your search is added to PubMed. Great for literature alerts on a gene, disease or technique.

Actions

Then Calibra can do this for you
  • DO
    Search PubMed Articles

    Searches PubMed with the same query syntax as the PubMed website and returns each article's title, authors, journal, date, DOI and link.

  • DO
    Get PubMed Articles

    Gets the title, authors, journal, date, DOI and link of one or more PubMed articles from their PMIDs.

  • DO
    Search NCBI Database

    Searches any NCBI database (Gene, ClinVar, dbSNP, PubMed, Protein…) and returns the matching IDs and, optionally, the summary of each record.

  • DO
    Get Record Summaries

    Gets the summary of one or more records from an NCBI database (Gene, ClinVar, dbSNP, Protein…) from their IDs.

  • DO
    Fetch Full Records

    Downloads the full content of NCBI records in a chosen format: PubMed abstracts, MEDLINE, Gene tables, ClinVar XML, FASTA sequences and more.

  • DO
    Custom NCBI E-utilities Request (read-only)

    Makes a GET request to any NCBI E-utilities endpoint (einfo, esearch, esummary, efetch, elink…). Your contact email, tool name and API key are added automatically.

Questions

Is the NCBI (PubMed, Gene, ClinVar, dbSNP) integration free?

Yes. NCBI (PubMed, Gene, ClinVar, dbSNP) is available on every Calibra plan, including the free plan, which needs no card.

How is NCBI (PubMed, Gene, ClinVar, dbSNP) usage billed?

Calibra charges one credit per workflow run, however many steps it has. Steps that read from or write to this app do not cost extra.

Can I connect NCBI (PubMed, Gene, ClinVar, dbSNP) without writing code?

Yes. Describe the process in plain words and the AI copilot builds the workflow with NCBI (PubMed, Gene, ClinVar, dbSNP) for you. You can also use templates or the visual editor.

Describe your first process. Watch it run today.

Free plan, no card. One credit per run, however many steps it has.

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